Welcome to OceanWiki
OceanWiki is an encyclopedia of marine biogeochemistry, and comprises descriptions of types of experimental data collected, types of computational models, and model strain isolates.
Origin Story & Mission
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers and shared resources to advance the field. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRIMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to define key terms used across disciplines, explain types of data generated by different methods, assumptions, and potential biases, and describe different types of models, required data inputs, computational demand, and limitations.
Primary Production
Photoautotrophy | Nitrogen Fixation | Phytoplankton C/N-Based Growth Rates | Chemoautotrophy
Secondary Production
Enzyme Activity | Growth Rate | Respiration
Nutrient Fluxes
Nitrogen | Phosphorus | Sulfur | Trace Metals | Biomineralization
Interactions
Grazing | Mixotrophy | Viruses | Allelopathy | Life cycles
Flux Balance Analysis | Proteome Allocation Models | Particle Simulation | Bio Particle Simulation | Macromolecular Model
Community Flux Balance Analysis | GENOME
CMIP | MARBL | Darwin | AWESOME-OCIM | PISCES
under development
A dictionary with definitions from both experimentalists, observationalists, and modelers.
Strain isolates
This is where the PriME strains could be listed and described.
Teaching material
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).