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== Origin Story & Mission == | == Origin Story & Mission == | ||
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org | Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org PRIMO] session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like ''What data was particularly helpful to inform a model?'' or ''How can a model help constrain experimental parameters?'', the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically: | ||
*defining key terms used across disciplines | *defining key terms used across disciplines | ||
*explain types of data generated by different methods, assumptions, and potential biases | *explain types of data generated by different methods, assumptions, and potential biases | ||
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[[Enzyme Activity]] | [[Growth Rate]] | [[Respiration]] | [[Enzyme Activity]] | [[Growth Rate]] | [[Respiration]] | ||
==== Nutrient Fluxes ==== | ==== Nutrient Fluxes ==== | ||
[[Nitrogen]] | [[ | [[Nitrogen]] | [[Phosphorus]] | [[Sulfur]] | [[Trace Metals]] | [[Biomineralization]] | ||
==== Interactions ==== | ==== Interactions ==== | ||
[[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | [[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | ||
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=== [[Model Types]] === | === [[Model Types]] === | ||
==== [[Cellular scale]] ==== | ==== [[Cellular scale]] ==== | ||
[[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | [[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | [[Macromolecular Model]] | ||
==== [[Biome scale]] ==== | ==== [[Biome scale]] ==== | ||
[[Community Flux Balance Analysis]] | [[GENOME]] | [[Community Flux Balance Analysis]] | [[GENOME]] | ||
Latest revision as of 06:06, 24 September 2026
While still under development, these are some of the exciting entries on models and measurements recently added by community members:
Respiration from oxygen consumption: optodes
Single Turnover Chlorophyll Fluorescence
NifH amplicon sequence
Net community production (NCP) - O₂/Ar
PISCES
CMIP
Proteome Allocation Models
Origin Story & Mission
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRIMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically:
- defining key terms used across disciplines
- explain types of data generated by different methods, assumptions, and potential biases
- describe different types of models, required data inputs, computational demand, and limitations
Content
OceanWiki is an encyclopedia of marine biogeochemistry, and consists of three components:
A dictionary with definitions from both experimentalists, observationalists, and modelers.
Primary Production
Photoautotrophy | Nitrogen Fixation | Phytoplankton C/N-Based Growth Rates | Chemoautotrophy
Secondary Production
Enzyme Activity | Growth Rate | Respiration
Nutrient Fluxes
Nitrogen | Phosphorus | Sulfur | Trace Metals | Biomineralization
Interactions
Grazing | Mixotrophy | Viruses | Allelopathy | Life cycles
Flux Balance Analysis | Proteome Allocation Models | Particle Simulation | Bio Particle Simulation | Macromolecular Model
Community Flux Balance Analysis | GENOME
CMIP | MARBL | Darwin | AWESOME-OCIM | PISCES
Teaching material
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).