Main Page: Difference between revisions

Latest revision as of 21:07, 24 February 2026

While still under development, these are some of the exciting entries on models and measurements recently added by community members:
Respiration from oxygen consumption: optodes
Single Turnover Chlorophyll Fluorescence
NifH amplicon sequence
Net community production (NCP) - O₂/Ar
PISCES
Darwin
CMIP
Proteome Allocation Models

Origin Story & Mission

Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRiMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically:

defining key terms used across disciplines
explain types of data generated by different methods, assumptions, and potential biases
describe different types of models, required data inputs, computational demand, and limitations

Content

OceanWiki is an encyclopedia of marine biogeochemistry, and consists of three components:

Lexicon

A dictionary with definitions from both experimentalists, observationalists, and modelers.

Data Types

Types of data from experimental observations and how they are obtained, grouped by the process they investigate.

Teaching material

This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).

@@ Line 1: / Line 1: @@
-== Welcome to Ocepedia ==
+{{DISPLAYTITLE:Welcome to OceanWiki}}
-Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Written output can highlight cross-discipline implications:<br>
+'''While still under development, these are some of the exciting entries on models and measurements recently added by community members:'''<br>
-*What data was particularly helpful to inform a model?<br>
+[[Respiration from oxygen consumption: optodes]]<br>
-*How can an experimentalist capitalize on a model to constrain parameter spaces?<br>
+[[Single Turnover Chlorophyll Fluorescence]]<br>
-Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined (via any of the three categories of work).
+[[NifH amplicon sequence]]<br>
+[[Net community production (NCP) - O₂/Ar]]<br>
+[[PISCES]]<br>
+[[Darwin]]<br>
+[[CMIP]]<br>
+[[Proteome Allocation Models]]
-'''Ocepedia''' is an encyclopedia to '''bride disciplines of marine biogeochemistry''', and consists of three components:
+== Origin Story & Mission ==
+Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org PRiMO] session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like ''What data was particularly helpful to inform a model?'' or ''How can a model help constrain experimental parameters?'', the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically:
+*defining key terms used across disciplines
+*explain types of data generated by different methods, assumptions, and potential biases
+*describe different types of models, required data inputs, computational demand, and limitations
-==== [[:Category:Lexicon|Lexicon]] ====
+== Content ==
-A dictionary with definitions from both experimentalists, observationalists, and modelers.<br>
+'''OceanWiki''' is an encyclopedia of '''marine biogeochemistry''', and consists of three components:
-(Include math, figures, etc. as needed)
-==== [[Data Types|Data wiki]] ====
+=== [[:Category:Lexicon|Lexicon]] ===
-Types of data from experimental observations explained including how they are obtained. Methods are grouped by the process they investigate.
+A dictionary with definitions from both experimentalists, observationalists, and modelers.
-*[[Photoautotrophy]]
-*[[Nitrogen fixation]]
-==== [[Model Types|Model wiki]] ====
+=== [[Data Types]] ===
-Types of models explained grouped by the scales they function at.<br>
+Types of data from experimental observations and how they are obtained, grouped by the process they investigate.
-*[[Cellular scale]]
+==== Primary Production ====
-*[[Biome scale]]
+[[Photoautotrophy]] | [[Nitrogen Fixation]] | [[Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]]
-*[[Global scale]]<br>
+==== Secondary Production ====
+[[Enzyme Activity]] | [[Growth Rate]] | [[Respiration]]
+==== Nutrient Fluxes ====
+[[Nitrogen]] | [[Phosphorous]] | [[Sulfur]] | [[Trace Metals]] | [[Biomineralization]]
+==== Interactions ====
+[[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]]
-These pages contain definitions, limitations, context, and references.<br>
+=== [[Model Types]] ===
-They are populated by researchers, naming responsible authors for accountability and credit.
+Types of models explained grouped by the scales they function at.
+==== [[Cellular scale]] ====
+[[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]]
+==== [[Biome scale]] ====
+[[Community Flux Balance Analysis]] | [[GENOME]]
+==== [[Global scale]] ====
+[[CMIP]] | [[MARBL]] | [[Darwin]] | [[AWESOME-OCIM]] | [[PISCES]]
-==== Webseries? ====
+=== Teaching material ===
-Videos to compliment the dictionary<br>
-- 20 minute discussion on a topic by a BGS expert<br>
+This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of [[How to contribute]]).
-Ideally, someone to coordinate this