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{{DISPLAYTITLE:Welcome to | {{DISPLAYTITLE:Welcome to OceanWiki}} | ||
'''While still under development, these are some of the exciting entries on models and measurements recently added by community members:'''<br> | |||
[[Respiration from oxygen consumption: optodes]]<br> | |||
[[Single Turnover Chlorophyll Fluorescence]]<br> | |||
[[NifH amplicon sequence]]<br> | |||
[[Net community production (NCP) - O₂/Ar]]<br> | |||
[[PISCES]]<br> | |||
[[Darwin]]<br> | |||
[[CMIP]]<br> | |||
[[Proteome Allocation Models]] | |||
== Origin Story & Mission == | == Origin Story & Mission == | ||
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org PRiMO] session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like ''What data was particularly helpful to inform a model?'' or ''How can a model help constrain experimental parameters?'', the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically: | Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org PRiMO] session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like ''What data was particularly helpful to inform a model?'' or ''How can a model help constrain experimental parameters?'', the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically: | ||
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== Content == | == Content == | ||
'''OceanWiki''' is an encyclopedia of '''marine biogeochemistry''', and consists of three components: | |||
=== [[:Category:Lexicon|Lexicon]] === | === [[:Category:Lexicon|Lexicon]] === | ||
A dictionary with definitions from both experimentalists, observationalists, and modelers. | A dictionary with definitions from both experimentalists, observationalists, and modelers. | ||
=== [[Data Types | |||
Types of data from experimental observations | === [[Data Types]] === | ||
Types of data from experimental observations and how they are obtained, grouped by the process they investigate. | |||
==== Primary Production ==== | ==== Primary Production ==== | ||
[[Photoautotrophy]] | [[Nitrogen Fixation]] | [[Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | [[Photoautotrophy]] | [[Nitrogen Fixation]] | [[Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | ||
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[[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | [[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | ||
=== [[Model Types | === [[Model Types]] === | ||
Types of models explained grouped by the scales they function at. | Types of models explained grouped by the scales they function at. | ||
==== [[Cellular scale]] ==== | |||
[[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | |||
==== [[Biome scale]] ==== | |||
[[Community Flux Balance Analysis]] | [[GENOME]] | |||
==== [[Global scale]] ==== | |||
[[CMIP]] | [[MARBL]] | [[Darwin]] | [[AWESOME-OCIM]] | [[PISCES]] | |||
=== Teaching material === | === Teaching material === | ||
This was a suggestion from the BioGeoScapes leadership | This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of [[How to contribute]]). | ||
Latest revision as of 21:07, 24 February 2026
While still under development, these are some of the exciting entries on models and measurements recently added by community members:
Respiration from oxygen consumption: optodes
Single Turnover Chlorophyll Fluorescence
NifH amplicon sequence
Net community production (NCP) - O₂/Ar
PISCES
Darwin
CMIP
Proteome Allocation Models
Origin Story & Mission
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers for cross-disciplinary work to advance the field. Yet, to integrate disciplines successfully, researchers need to be vocal about discrepancy and uncertainty, and realize caveats of how values are determined. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRiMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to address needs that have arisen in conversations specifically:
- defining key terms used across disciplines
- explain types of data generated by different methods, assumptions, and potential biases
- describe different types of models, required data inputs, computational demand, and limitations
Content
OceanWiki is an encyclopedia of marine biogeochemistry, and consists of three components:
A dictionary with definitions from both experimentalists, observationalists, and modelers.
Types of data from experimental observations and how they are obtained, grouped by the process they investigate.
Primary Production
Photoautotrophy | Nitrogen Fixation | Phytoplankton C/N-Based Growth Rates | Chemoautotrophy
Secondary Production
Enzyme Activity | Growth Rate | Respiration
Nutrient Fluxes
Nitrogen | Phosphorous | Sulfur | Trace Metals | Biomineralization
Interactions
Grazing | Mixotrophy | Viruses | Allelopathy | Life cycles
Types of models explained grouped by the scales they function at.
Flux Balance Analysis | Proteome Allocation Models | Particle Simulation | Bio Particle Simulation
Community Flux Balance Analysis | GENOME
CMIP | MARBL | Darwin | AWESOME-OCIM | PISCES
Teaching material
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).