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{{DISPLAYTITLE:Welcome to OceanWiki}}'''OceanWiki''' is an encyclopedia of '''marine biogeochemistry''', and comprises descriptions of types of '''experimental data''' collected, types of '''computational models''', and model '''strain isolates'''. | {{DISPLAYTITLE:Welcome to OceanWiki}}'''OceanWiki''' is an encyclopedia of '''marine biogeochemistry''', and comprises descriptions of types of '''experimental data''' collected, types of '''computational models''', and model '''strain isolates'''. | ||
=== [[Data Types]] == | == Origin Story & Mission == | ||
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers and shared resources to advance the field. This community-driven collection of biogeochemical output began at the [https://biogeoscapes.org/ BioGeoScapes] modelling workshop and the following [https://www.primoscorwg.org PRIMO] session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like ''What data was particularly helpful to inform a model?'' or ''How can a model help constrain experimental parameters?'', the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to define key terms used across disciplines, explain types of data generated by different methods, assumptions, and potential biases, and describe different types of models, required data inputs, computational demand, and limitations. | |||
== [[Data Types]] == | |||
==== Primary Production ==== | ==== Primary Production ==== | ||
[[Photoautotrophy]] | [[Nitrogen Fixation]] | [[index.php?title=Phytoplankton C/N-Based Growth Rates|Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | [[Photoautotrophy]] | [[Nitrogen Fixation]] | [[index.php?title=Index.php?title=Phytoplankton C/N-Based Growth Rates|Phytoplankton C/N-Based Growth Rates]] | [[Chemoautotrophy]] | ||
==== Secondary Production ==== | ==== Secondary Production ==== | ||
[[Enzyme Activity]] | [[Growth Rate]] | [[Respiration]] | [[Enzyme Activity]] | [[Growth Rate]] | [[Respiration]] | ||
| Line 12: | Line 16: | ||
[[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | [[Grazing]] | [[Mixotrophy]] | [[Viruses]] | [[Allelopathy]] | [[Life cycles]] | ||
== [[Model Types]] == | |||
==== [[Cellular scale]] ==== | ==== [[Cellular scale]] ==== | ||
[[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | [[Macromolecular Model]] | [[Flux Balance Analysis]] | [[Proteome Allocation Models]] | [[Particle Simulation]] | [[Bio Particle Simulation]] | [[Macromolecular Model]] | ||
| Line 19: | Line 24: | ||
==== [[Global scale]] ==== | ==== [[Global scale]] ==== | ||
[[CMIP]] | [[MARBL]] | [[Darwin]] | [[AWESOME-OCIM]] | [[PISCES]] | [[CMIP]] | [[MARBL]] | [[Darwin]] | [[AWESOME-OCIM]] | [[PISCES]] | ||
=== [[ | |||
== under development == | |||
=== [[index.php?title=Category:Lexicon|Lexicon]] === | |||
A dictionary with definitions from both experimentalists, observationalists, and modelers. | A dictionary with definitions from both experimentalists, observationalists, and modelers. | ||
=== Strain isolates === | |||
This is where the PriME strains could be listed and described. | |||
=== Teaching material === | === Teaching material === | ||
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of [[How to contribute]]). | This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of [[How to contribute]]). | ||
Latest revision as of 14:27, 20 October 2026
OceanWiki is an encyclopedia of marine biogeochemistry, and comprises descriptions of types of experimental data collected, types of computational models, and model strain isolates.
Origin Story & Mission
Marine biogeochemistry needs a shared vocabulary between experimentalists and modelers and shared resources to advance the field. This community-driven collection of biogeochemical output began at the BioGeoScapes modelling workshop and the following PRIMO session at Woods Hole Oceanographic Institution in September 2025. To highlight cross-discipline implications like What data was particularly helpful to inform a model? or How can a model help constrain experimental parameters?, the idea arose to create a Wiki that provided a central repository for basic information related to interdisciplinary biogeochemistry science. This emerged as a way to define key terms used across disciplines, explain types of data generated by different methods, assumptions, and potential biases, and describe different types of models, required data inputs, computational demand, and limitations.
Primary Production
Photoautotrophy | Nitrogen Fixation | Phytoplankton C/N-Based Growth Rates | Chemoautotrophy
Secondary Production
Enzyme Activity | Growth Rate | Respiration
Nutrient Fluxes
Nitrogen | Phosphorus | Sulfur | Trace Metals | Biomineralization
Interactions
Grazing | Mixotrophy | Viruses | Allelopathy | Life cycles
Flux Balance Analysis | Proteome Allocation Models | Particle Simulation | Bio Particle Simulation | Macromolecular Model
Community Flux Balance Analysis | GENOME
CMIP | MARBL | Darwin | AWESOME-OCIM | PISCES
under development
A dictionary with definitions from both experimentalists, observationalists, and modelers.
Strain isolates
This is where the PriME strains could be listed and described.
Teaching material
This was a suggestion from the BioGeoScapes leadership. If you are interested in leading the effort, please get in contact with one of us (see the bottom of How to contribute).