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Bulk uptake 15N2

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Bulk uptake 15N2

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N2 fixation (bulk 15N2)
Approach: 15N2 stable isotope tracer uptake
Context: incubation, in situ
Spatial scale: point sample
Temporal scale: hours to one day
Units: nmol N L-1 d-1; µmol N m-2 d-1 (depth-integrated)
Community captured: bulk, size-fractionated
Co-measurements: background δ15N (PON), 15N2 enrichment of dissolved phase; can couple with 13CO2 uptake

Method Overview

15N2 gas is dissolved into seawater and added to incubation bottles, labelling the dissolved N2 pool. Diazotrophic microorganisms fix the labelled N2, incorporating 15N into their biomass. After incubation, the particulate fraction is collected on pre-combusted GF/F filters; the 15N enrichment in particulate nitrogen (PN) is measured by EA-IRMS. The N2 fixation rate is calculated from the 15N excess in PN relative to the 15N enrichment of the dissolved N2 pool, measured by MIMS or GC-IRMS[1].

Two labelling approaches are used: (1) direct injection of 15N2 gas bubbles followed by vigorous shaking and equilibration; and (2) the dissolution method, in which pre-dissolved 15N2-enriched water is injected, achieving more homogeneous labelling. The method can be coupled with 13CO2 uptake in the same incubation to simultaneously measure N2 fixation and carbon fixation by diazotrophs.

Scale of measurement

Each incubation provides a point measurement. Depth-integrated fixation rates are obtained by incubating bottles collected from multiple depths and integrating over the euphotic zone. Incubation duration is typically hours to one day.

Data generated

N2 fixation rates in nmol N L-1 d-1 or µmol N m-2 d-1 (depth-integrated). Rates can be size-fractionated (e.g., 0.2–10 µm versus > 10 µm) to attribute fixation to different diazotroph size classes (unicellular vs. filamentous). Fixed nitrogen can also be tracked into the dissolved organic nitrogen (DON) pool.

Units & currency

Units are nmol N L-1 d-1 or µmol N m-2 d-1. The currency is nitrogen.

Sample size

Typical samples are 1–5 L in volume per incubation.

Repositories & databases

Limitations

The 15N2 enrichment of the dissolved pool must be measured accurately; under-estimation of the 15N2 enrichment (e.g., due to incomplete equilibration of bubbles) leads to overestimation of fixation rates. Bubble injection produces heterogeneous enrichment across replicate bottles; the dissolution method mitigates this. Diazotroph community composition affects the timing of fixation: Crocosphaera fixes N2 primarily at night, UCYN-A primarily during the day. Bottle effects apply.

Example Applications & Protocols

Classic examples

  • Montoya et al. (1996) A simple, high-precision, high-sensitivity tracer assay for N2 fixation [1]
  • Wilson et al. (2012) Comparative assessment of nitrogen fixation methodologies, conducted in the oligotrophic North Pacific Ocean [2]
  • Großkopf et al. (2012) Doubling of marine dinitrogen-fixation rates based on direct measurements [3]

Recent applications

  • Tschitschko et al. (2024) Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean [4]

Common calculations/conversions

  • N2 fixation rate (nmol N L-1 d-1) = [(15NPN,final15NPN,initial) / (15NN2,dissolved15Nnatural)] × [PN] / incubation time.
  • Depth-integrated rate (µmol N m-2 d-1) = ∫ rate(z) dz over the euphotic zone.

References

  1. 1.0 1.1 Montoya, J. P., Voss, M., Kähler, P., & Capone, D. G. (1996). A simple, high-precision, high-sensitivity tracer assay for N2 fixation. Applied and Environmental Microbiology, 62(3), 986–993. https://doi.org/10.1128/aem.62.3.986-993.1996
  2. Wilson, S. T., Böttjer, D., Church, M. J., & Karl, D. M. (2012). Comparative assessment of nitrogen fixation methodologies, conducted in the oligotrophic North Pacific Ocean. Applied and Environmental Microbiology, 78(18), 6516–6523. https://doi.org/10.1128/AEM.01146-12
  3. Großkopf, T., Mohr, W., Baustian, T., Schunck, H., Gill, D., Kuypers, M. M. M., Lavik, G., Schmitz, R. A., Wallace, D. W. R., & LaRoche, J. (2012). Doubling of marine dinitrogen-fixation rates based on direct measurements. Nature, 488(7411), 361–364. https://doi.org/10.1038/nature11338
  4. Tschitschko, B., Landa, M., Cheung, S., Zheng, H., Williams, C. M., Vergin, K., Giovannoni, S. J., Rocap, G., & Lindell, D. (2024). Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean. Nature, 630, 899–904. https://doi.org/10.1038/s41586-024-07495-w